Login | New Account  |  Help
Publications

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM,
Perna, NT, Glasner J, Plunkett G 3rd, Shaker M, and Pot D. Text-mining of PubMed abstracts
by natural language processing to create a public knowledge base on molecular mechanisms
of bacterial enteropathogens.
BMC Bioinformatics 2009; 10(177)
 
Baumler DJ, Hung KF, Cabot EL, Glasner JD, Greene JM, and Perna NT. Annotation of
the Bacteriophage 933W Genome: An In-Class Interactive Web-based Exercise.
MicrobeLibrary Online 2008
 
Glasner, JD, Plunkett G 3rd, Anderson B, Baumler D, Biehl B, Burland V, Cabot E, Darling A,
Mau B, Neeno-Eckwall E, Pot D, Qiu Y, Rissman A, Zaremba S, Fedorko J, Liss, P, Rusch, M,
Shaker M, Shaull L, Shetty P, Whitmore J, Blattner FR, Greene JM, and Perna NT.
Enteropathogen Resource Integration Center (ERIC) - bioinformatics support for research
on biodefense - relevant enterobacteria.
Nucleic Acids Research 2008; 36 (Database issue):D519-523.
[PMID:17999997]
 
Greene JM, Collins F, Lefkowitz E, Roos D, Scheuermann R, Sobral B, Stevens R, White O,
and Di Francesco V. National institute of allergy and infectious diseases bioinformatics
resource centers: New assets for pathogen informatics.
Infect Immun 2007;75(7):3212-3219.
[PMID: 17420237].
 
Greene JM, Perna N, Blattner F. ERIC-Comprehensive bioinformatics resources for enteropathogens.
Microbe 2007; 2(7)322-323.
 
Greene JM, Plunkett G 3rd, Burland V, Glasner J, Cabot E, Anderson B, Neeno-Eckwall E, Qiu Y,
Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M, Shaull L, Shetty P, Shi C, Whitmore J,
Wong M, Zaremba S, Blattner FR, and Perna NT. (2007). A New Asset for Pathogen Informatics
- The Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource
Center for Biodefense and Emerging/Re-emerging Infectious Disease.
Advances in Experimental Medicine and Biology
, Volume 603: 28-42. PMID: 17966403.
 
Brinkely C, Burland V, Keller R, Rose DJ, Boutin AT, Klink SA, Blattner FR, Kaper JB.
Nucleotide sequence analysis of the enteropathogenic Escherichia coli adherence factor
plasmid pMAR7
. Infect Immun 2006;74(9):5408-5413. [PMID: 16926437].
 
Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T,
Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G III, Rudd KE, Serres MH, Thomas GH,
Thomson NR, Wishart D, and Wanner BL Escherichia coli K-12: A cooperatively developed
annotation snapshot--2005
. Nucleic Acids Res 2006;34(1):1-9.
 
Glasner JD, Rusch M, Liss P, Plunkett G III, Cabot EL, Darling A, Anderson BD, Infield-Harm P,
Gilson MC, and Perna NT. ASAP: A resource for annotating, curating, comparing, and
disseminating genomic data
. Nucleic Acids Res 2006;34(Database issue):D41-D45.
 
Darling ACE, Mau B, Blattner FR, and Perna NT. Mauve: Multiple alignment of conserved
genomic sequence with rearrangements
. Genome Res 2004;14(7):1394-1403.
 
Glasner JD, Liss P, Plunkett G III, Darling A, Prasad T, Rusch M, Byrnes A, Gilson M, Biehl B,
Blattner FR, and Perna NT. ASAP, a systematic annotation package for community analysis of
genomes
. Nucleic Acids Res 2003;31(1):147-151.
 

ERIC Newsletters