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Salmonella spp.

Salmonella spp.

Salmonella is named in honor of the American veterinary pathologist Daniel Salmon (1850-1914), who, with his colleague Theobald Smith, first described them in 1885. They are Gram-negative, non-sporeforming, rod-shaped bacteria, usually motile and possessing a facultative but lactose(-) metabolism. The nomenclature of Salmonella strains is very confusing, with different serovars being designated as different species. To complicate matters, serovars of Salmonella can be subgrouped even further by 'phage type,' based on the specificity of phage to differentiate between extremely closely related bacteria. More than 2000 'species' have been classified. For more on Salmonella nomenclature, see J.P. Euzéby's List of Prokaryotic Names with Standing in Nomenclature.

A number of Salmonella species are pathogenic, and some strains display host specificity for humans or for different livestock species. Salmonellosis is generally characterized by diarrhea, cramping, nausea, vomiting, and fever. The gastroenteritis is usually short-lived and mild, but a few strains produce a severe and often fatal disease, marked by increasing fever, headache and abdominal pain and followed in some cases by intestinal rupture, internal bleeding, shock, and death.

Salmonella is usually spread by ingestion of food or water contaminated with animal feces, although some human-specific strains are spread via human fecal sources of contamination. Although most Salmonella survive for long periods in the environment, they are readily killed by acid, so a large number must be ingested for some to survive passage through the stomach. Once they reach the lower small intestine, the bacteria attach to epithelial cells via an adhesin on the bacterial surface. This contact activates a type III secretion system, and bacterial substances transferred to the host cells induce endocytosis. The bacteria multiply within the phagosome, and are released to underlying tissues. In most cases the bacteria are quickly taken up and killed by macrophages, but the body's inflammatory response causes an increase in fluid secretion, resulting in diarrhea. Some strains resist killing by macrophages and are spread throughout the body; their subsequent release by death of the macrophages leads to a systemic response.

In general the strains we deal with here are different serovars of Salmonella enterica. As their name suggests Salmonella enterica are involved in causing diseases of the intestines. The three main serovars of Salmonella enterica are Typhimurium, Enteritidis, and Typhi.

  • Salmonella enterica serovar Typhi (Salmonella Typhi) is the causative agent of typhoid fever. Although typhoid fever is not widespread in the United States, it is very common in developing countries, and causes a serious, often fatal disease. Symptoms of typhoid fever include nausea, vomiting, fever and death. Unlike many other Salmonella, S. Typhi can only infect humans, and the main source of infection is from swallowing infected water. Food may also be contaminated with S. Typhi, if it is washed or irrigated with contaminated water. Unlike many bacteria, S. Typhi can colonize the gall bladder, and the resultant carriers - often asymptomatic - can shed huge numbers of bacteria (up to 10 billion/gram of feces) for years.
  • Salmonella enterica serovar Typhimurium (Salmonella Typhimurium) was until recently the most common cause of food poisoning by Salmonella species in the United States. It causes a typhoid-like disease in mice, but in humans S. Typhimurium does not cause as severe disease as S. Typhi, and is not normally fatal. The disease is characterized by diarrhea, abdominal cramps, vomiting and nausea, and generally lasts up to 7 days. However, in the elderly, infants, or people with depressed immune systems, Salmonella infections are often fatal if they are not treated with antibiotics.
  • Salmonella enterica serovar Enteritidis (Salmonella Enteritidis) has become the single most common cause of food poisoning in the U.S. in the last 20 years. It causes a disease almost identical to the closely related S. Typhimurium.   S. Enteritidis can infect poultry flocks without causing visible disease, and then rapidly spread from bird to bird. The recent increase in the rise of S. Enteritidis infections has been blamed on the increased usage of mass production chicken farms.
Organism Isolate/Strain Genomic Sequence Status Query Annotations Browse Genome
Salmonella spp.
Salmonella Typhi Ty2 Sequencing complete
Salmonella Typhi CT18 Sequencing complete
Salmonella Typhimurium LT2 Sequencing complete
Salmonella Typhimurium DT104 Sequencing complete
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N/A
Salmonella Typhimurium SL1344 Sequencing complete
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N/A
Salmonella Typhimurium plasmid R27 Sequencing complete
Salmonella Typhimurium DT2 Draft assembly
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N/A
Salmonella Typhimurium D23580 Finishing/gap closure
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N/A
Salmonella Hadar [Not Indicated] Finishing/gap closure
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N/A
Salmonella Infantis [Not Indicated] Finishing/gap closure
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N/A
Salmonella Enteritidis PT4 Sequencing complete
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N/A
Salmonella bongori 12419 Sequencing complete
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N/A
Salmonella Paratyphi A ATCC 9150 Sequencing complete
Salmonella Paratyphi A [Not Indicated] Sequencing complete
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N/A
Salmonella Paratyphi B SPB7 Draft assembly
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N/A
Salmonella Arizonae CDC 346-86 Draft assembly
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N/A
Salmonella Diarizonae CDC 01-0005 Draft assembly
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N/A
Salmonella Enteritidis LK5 Finishing/gap closure
Download from salmonella.org
N/A
Salmonella Paratyphi C [Not Indicated] Finishing/gap closure
Not Yet Available
N/A
Salmonella Pullorum [Not Indicated] Finishing/gap closure
Not Yet Available
N/A
Salmonella Dublin [Not Indicated] Finishing/gap closure
Not Yet Available
N/A
Salmonella Choleraesuis SC-B67 Sequencing complete
Salmonella Gallinarum 287/91 Sequencing complete
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N/A

Immune Epitope Database Links:
Salmonella
Salmonella enterica
Salmonella enterica subsp. enterica serovar Essen
Salmonella enterica subsp. enterica serovar Minnesota
Salmonella enterica subsp. enterica serovar Pullorum
Salmonella enteritidis
Salmonella typhi
Salmonella typhimurium
A link to Salmonella IEDB records is provided since many of the epitopes are not characterized at a strain specific level and they may or may not be present in a specific Salmonella strain of interest.

Web Resources:
NCBI's MedlinePlus Medical Encyclopedia: Salmonella enterocolitis
Latest Foodborne Pathogen Scientific News
NCBI's MedlinePlus Health Topics - Salmonella Infections
NCBI's MedlinePlus Medical Encyclopedia - Typhoid fever

CDC's Disease Information Pages:
CDC Disease Information page: Salmonellosis
CDC Disease Information page: Typhoid Fever
CDC Disease Information page: Salmonella enteritidis
FDA's Center for Food Safety & Applied Nutrition: Salmonella spp.