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Yersinia pestis biovar Antiqua Nepal516
  Query YpNepal516 Annotations in ERIC
  Browse YpNepal516 Genome in ERIC
Other names N/A
Strain Nepal516
Serotype [Cryptic Serotype O:1b]
Chromosome and Plasmid(s) Size 4,534,590 bp (chromosome); 100,918 bp (pMT); 10,778 bp (pPCP)
Genomic Sequence Status Sequencing complete (note: a third plasmid, the ~70 kb pCD, was underrepresented in the shotgun and was not completed)
Assembly Status Final assembly at ~11X coverage; 2 plasmids
Sequencing Center DOE Joint Genome Institute
Sequencing Center Contact(s) Paul Richardson
Trace Files Status Availability unknown
Computational Annotation Status Published J Bacteriol. 188(12), 4453-4463 (2006)
Manual Curation Status Long term curation plans unknown
GenBank/EMBL/DDBJ Entries CP000305 (chromosome); CP000306 (pMT); CP000307 (pPCP)
NCBI RefSeq Entries NC_008149 (chromosome); NC_008118 (pMT); NC_008119 (pPCP)
Genome Trending


Feature Trending

This graph and associated table shows the trend in the number of features of this genome over a selected period of time.

To change the focus of the graph to a specific feature type select the appropriate name from the leftmost column in the table.

Use the links below to select the timeframe and period of the graph.

Timeframe: 6 months 1 year 2 years Period: 6 months 3 months 1 month

Feb 2006 Aug 2006 Feb 2007 Aug 2007 Feb 2008 Aug 2008
-10_signal 0 0 0 1 1 1
-35_signal 0 0 0 1 1 1
CDS 0 4,091 4,092 4,092 4,092 4,092
is_element 0 115 140 140 140 140
island 0 0 1 1 1 1
misc_RNA 0 13 13 14 15 16
misc_feature 0 1 1 1 1 1
polymorphic site 0 0 0 0 2,724 2,724
protein_bind 0 0 0 2 2 2
pseudogene 0 8 16 18 18 18
rRNA 0 21 21 21 21 21
sig_peptide 0 691 691 691 691 691
source 0 3 3 3 3 3
tRNA 0 72 72 72 72 72