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Yersinia pestis biovar Mediaevalis KIM
  Query YPKIM Annotations in ERIC
  Browse YPKIM Genome in ERIC
Other names N/A
Strain KIM
Serotype [Cryptic Serotype O:1b]
Chromosome and Plasmid(s) Size [1] 4,600,755 bp (chromosome); 100,990 bp (pMT1); 70,559 bp (pCD1); ~9600 bp (pPCP1)
[2] 100,984 bp (pMT1); 70,504 bp (pCD1); 9610 bp (pPCP1)
Genomic Sequence Status Sequencing complete
Assembly Status Final assembly at ~8X coverage; 3 plasmids
Sequencing Center [1] University of Wisconsin - Madison
[2] Lawrence Livermore National Laboratory
Sequencing Center Contact(s) [1] Guy Plunkett III or Val Burland
[2] Emilio Garcia or Patrick Chain
Trace Files Status Archived; not online
Computational Annotation Status Published: [1] J. Bacteriol. 184, 4601-4611 (2002)
Published: [2] J. Bacteriol. 180, 5192-5202 (1998)
Manual Curation Status On going by the sequencing center
GenBank/EMBL/DDBJ Entries [1] AE009952 (chromosome); AF074611 (pMT1); AF074612 (pCD1); unpublished (pPCP1)
[2] AF053947 (pMT1); AF053946 (pCD1); AF053945 (pPCP1)
NCBI RefSeq Entries [1] NC_004088 (chromosome); NC_004838 (pMT1); NC_004839 (pCD1)
[2] NC_004835 (pMT1); NC_004836 (pCD1); NC_004837 (pPCP1)
Genome Trending


Feature Trending

This graph and associated table shows the trend in the number of features of this genome over a selected period of time.

To change the focus of the graph to a specific feature type select the appropriate name from the leftmost column in the table.

Use the links below to select the timeframe and period of the graph.

Timeframe: 6 months 1 year 2 years Period: 6 months 3 months 1 month

Feb 2006 Aug 2006 Feb 2007 Aug 2007 Feb 2008 Aug 2008
-10_signal 1 4 4 5 5 5
-35_signal 1 4 4 5 5 5
CDS 4,302 4,328 4,334 4,335 4,335 4,336
RBS 1 2 2 2 2 2
is_element 129 129 142 142 142 142
island 0 0 1 1 1 1
misc_RNA 7 7 7 8 9 9
misc_difference 26 26 26 26 26 26
misc_feature 25 26 26 26 26 26
polymorphic site 0 0 0 0 2,929 2,929
promoter 1 1 1 1 1 1
protein_bind 0 3 3 5 5 5
pseudogene 39 81 91 92 92 92
rRNA 22 22 22 22 22 22
rep_origin 2 2 2 2 2 2
repeat_region 30 30 30 30 30 30
source 4 4 4 4 4 4
stem_loop 0 2 2 2 2 2
tRNA 73 73 73 73 73 73
terminator 1 3 3 3 3 3